WebArrayDB: cross-platform microarray data analysis and public data repository

WebArrayDB: cross-platform microarray data analysis and public data repository

MOTIVATION Cross-platform microarray analysis is an increasingly important research tool, but researchers still lack open source tools for storing, integrating and analyzing large amounts of microarray data obtained from different array platforms. RESULTS An open source integrated microarray database and analysis suite, WebArrayDB (http://www.webarraydb.org), has been developed that features ...

InCroMAP: integrated analysis of cross-platform microarray and pathway data

SUMMARY Microarrays are commonly used to detect changes in gene expression between different biological samples. For this purpose, many analysis tools have been developed that offer visualization, statistical analysis and more sophisticated analysis methods. Most of these tools are designed specifically for messenger RNA microarrays. However, today, more and more different microarray platforms ...

cDNA Microarray Data Normalization

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data

The rapid accumulation of microarray data translates into an urgent need for tools to perform integrative microarray analysis. Integrative Array Analyzer is a comprehensive analysis and visualization software toolkit, which aims to facilitate the reuse of the large amount of cross-platform and cross-species microarray data. It is composed of the data preprocess module, the co-expression analysi...

Cross-Platform Microarray Data Integration Combining Meta-Analysis and Gene Set Enrichment Analysis

Integrative analysis of microarray data has been proven as a more reliable approach to deciphering molecular mechanisms underlying biological studies. Traditional integration such as meta-analysis is usually gene-centered. Recently, gene set enrichment analysis (GSEA) has been widely applied to bring gene-level interpretation to pathway-level. GSEA is an algorithm focusing on whether an a prior...